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galaxy-mcp

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Python

★ 38 stars Last pushed 2026-09-24 License: MIT

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Connect

Review any command before running it. Package names and URLs come from the server's own registry entry.

Package (pypi 1.3.0)

uvx galaxy-mcp

Or add to your MCP client config:

{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<YOUR_VALUE>",
        "GALAXY_API_KEY": "<YOUR_VALUE>"
      }
    }
  }
}

GALAXY_URL required — URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)
GALAXY_API_KEY required secret — API key for authenticating with the Galaxy instance