HomeOther › ENCODE Toolkit

ENCODE Toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

Python Linux
★ 20 stars Last pushed 2026-09-21 License: AGPL-3.0

Topics: Biology, Medicine and Bioinformatics

Connect

Review any command before running it. Package names and URLs come from the server's own registry entry.

Package (npm 0.3.0-beta.5)

npx -y [email protected]

Or add to your MCP client config:

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "[email protected]"
      ]
    }
  }
}

Package (pypi 0.3.0b5)

uvx encode-toolkit

Or add to your MCP client config:

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "uvx",
      "args": [
        "encode-toolkit"
      ]
    }
  }
}

Related servers

Listed in punkpeye/awesome-mcp-servers (MIT)

Data from the Official MCP Registry