Biology, Medicine and Bioinformatics MCP Servers
Biology, Medicine and Bioinformatics topic — 47 MCP servers, ranked by GitHub stars.
biomcp
Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.
apple-health-mcp-server
An MCP server that provides access to exported data from Apple Health. Data analytics included.
HealthChain
Typed, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with…
FHIR MCP Server
MCP server providing seamless access to FHIR APIs for AI tools and healthcare applications
medical-mcp
An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query…
fhir-mcp-server
MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.
google-health-mcp
Privacy-first unofficial Google Health API v4 MCP server for health, sleep, activity, HR agents
ChatSpatial
Schema-enforced spatial transcriptomics analysis with 20 tools and 66 methods via MCP
omop_mcp
Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.
biothings-mcp
MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.
gget-mcp
MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular `gget` library.
opengenes-mcp
MCP server for a queryable database for aging and longevity research from the OpenGenes project.
ENCODE Toolkit
20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines
Medical Terminologies MCP
Diagnoses, drugs & lab codes: ICD-11, SNOMED, LOINC, RxNorm, MeSH, ATC, CID-10. 33 tools, MIT.
wellness-nourish
Local-first nutrition MCP for AI agents: food, barcode, photo, intake, hydration, goals.
synergy-age-mcp
MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.
heor-agent-mcp
HEOR MCP server: literature search, CEA, BIA, NMA/MAIC, HTA dossiers (NICE/FDA/EMA/JCA).
Context by Fulcra
Connect your Fulcra Context personal datastore: access your metrics, events, agent data and more
ucsc-genome-mcp
MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.
Plant Genomics
Plant genomics MCP — 52 tools across 23 backends with cross-source synthesis.
mcp-techTrend
Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls).…
DICOM/HL7/FHIR Interoperability MCP Server
Bridges DICOM, HL7v2, and FHIR with cross-standard mapping and optional PACS connectivity.
DICOMweb MCP Server
MCP server exposing a DICOMweb DICOM archive to AI assistants via QIDO-RS and WADO-RS.
AlphaFold Sovereign MCP
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
practice-fusion-mcp
FHIR-first, read-only MCP server for the Practice Fusion EHR. Search patients and review appointments, conditions, medications, and lab…
aria-mcp-server
Search 35M+ PubMed, 400K+ ClinicalTrials.gov & ISRCTN trials. Prompts included. No API key.
UniProt MCP
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.
onekgpd-mcp
real-time access to 1000 Genomes Project dataset
mymedi-ai-mcp-server
Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER,…
pubmed-search
Search PubMed and summarize biomedical literature, designed for AI health agents.
flowproof-mcp
Run reproducible bioinformatics pipelines (Nextflow) from an AI assistant, with verifiable Workflow Run RO-Crate provenance (container…
wellness-cgm-mcp
Local-first CGM MCP for AI agents: Dexcom Developer API + FreeStyle Libre via LibreLink Up.
Evipedia
MCP Server for evipedia.ai — evidence-based reviews of health & longevity interventions
lecka-mcp
Race nutrition planning for endurance athletes. Calculates carb, sodium and fluid targets for marathons, ultras, cycling and triathlons.…
oura-mcp
Ask your Oura Ring about sleep, readiness, activity, stress and heart rate in ChatGPT or Claude, in any language. Read-only,…
opdstar-nhi-mcp
Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20…
decoder-3am-mcp
Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups…
GPH Intelligence - Healthcare Vendor Finder
Find 76,000+ curated healthcare service vendors across 25 categories and all 50 US states.
nutrients-mcp
Analyze food photos or text for calories, macros, vitamins, minerals, and allergens.
Noodle Biomedical Literature Discovery MCP
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
genomic-agent-discovery
Multi-agent MCP server for genomic analysis — specialized AI agents analyze raw DNA files across 16 databases (ClinVar, GWAS, gnomAD,…
vitamind-mcp
Solar vitamin D: whether the sun where you are can make vitamin D right now, how many minutes your Fitzpatrick skin type needs for a…
biorobotics
A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the…
superglookoquery
Clinical audit of Glooko diabetes data (any pump/CGM combination, not just one) inside Claude Desktop: time in range, GMI, trends,…
clarity-mcp
Condition-aware ingredient, product & supplement safety for agents, with provenance on every answer — a verdict, an evidence tier…
fda-risk-radar-mcp
The MCP server behind [Constat](https://constat.dev): FDA & NHTSA regulatory-risk intelligence for agents — device compliance risk by…
pymol-mcp
Headless PyMOL for molecular visualization, GROMACS/LAMMPS MD trajectories, and clathrate-hydrate cage analysis: H-bond networks, F3/F4…